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Core-Contributed Publications

 

We appreciate acknowledgement in and notification of publications that involved the use of the MGH CCIB DNA Core. This helps us to demonstrate our value and enables us to obtain financial and other support so that we can continue to provide essential research services in the best ways possible. User publications acknowledging the contributions of the MGH CCIB DNA Core are listed below. We are updating this list (spanning years 2010-2016) periodically. Please let us know when your research is published or a grant is awarded.

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Congratulations to the following authors for their recent publications featuring data generated in the MGH CCIB DNA Core Facility:

2017

  • Cho YB, Jones SI, Vodkin LO: Mutations in Argonaute5 illuminate epistatic interactions of the K1 and I loci leading to saddle seed color patterns in Glycine max. The Plant Cell 2017:tpc. 00162.02017

  • Grigelioniene G, Nevalainen PI, Reyes M, Thiele S, Tafaj O, Molinaro A, Takatani R, Ala-Houhala M, Nilsson D, Eisfeldt J: A Large Inversion Involving GNAS Exon A/B and All Exons Encoding Gsα Is Associated with Autosomal Dominant Pseudohypoparathyroidism Type Ib (PHP1B). Journal of Bone and Mineral Research 2017

  • Kearns P, Fischer S, Fernández-Beaskoetxea S, Gabor C, Bosch J, Bowen JL, Tlusty MF, Woodhams D: Fighting fungi with fungi: the mycobiome contribution to emerging disease in amphibians. PeerJ Preprints 2017, 5:e3017v3011

  • Lee GQ, Orlova-Fink N, Einkauf K, Chowdhury FZ, Sun X, Harrington S, Kuo H-H, Hua S, Chen H-R, Ouyang Z: Clonal expansion of genome-intact HIV-1 in functionally polarized Th1 CD4+ T cells. The Journal of clinical investigation 2017, 127 [Free Article]

  • Pál T, Ghazawi A, Darwish D, Villa L, Carattoli A, Hashmey R, Aldeesi Z, Jamal W, Rotimi V, Al-Jardani A: Characterization of NDM-7 Carbapenemase-Producing Escherichia coli Isolates in the Arabian Peninsula. Microbial Drug Resistance 2017

  • Pianta A, Arvikar S, Strle K, Drouin EE, Wang Q, Costello CE, Steere AC: Evidence of the Immune Relevance of Prevotella copri, a Gut Microbe, in Patients With Rheumatoid Arthritis. Arthritis & Rheumatology 2017, 69:964-975

  • Sriram S, Tran JA, Guo X, Hutcheon AE, Kazlauskas A, Zieske JD: Development of wound healing models to study TGFβ3's effect on SMA. Experimental Eye Research 2017

  • Sriram S, Tran JA, Guo X, Hutcheon AE, Lei H, Kazlauskas A, Zieske JD: PDGFRα Is a Key Regulator of T1 and T3's Differential Effect on SMA Expression in Human Corneal FibroblastsAbsence of PDGFRα Makes TGFB3 Stimulate SMA. Investigative Ophthalmology & Visual Science 2017, 58:1179-1186

  • Tidball AM, Dang LT, Glenn TW, Kilbane EG, Klarr DJ, Margolis JL, Uhler MD, Parent JM: Rapid Generation of Human Genetic Loss-of-Function iPSC Lines by Simultaneous Reprogramming and Gene Editing. Stem Cell Reports 2017

  • Zegpi R, Breedlove C, van Santen VL, Rasmussen C, Toro H: Kidney Cell-Adapted Infectious Bronchitis ArkDPI Vaccine is Stable and Protective. Avian Diseases 2017

2016

  • Andrade-Domínguez A, Kolter R: Complete Genome Sequence of Pseudomonas aeruginosa Phage AAT-1. Genome Announcements 2016, 4:e00165-00116; [Free Article]

  • Bhardwaj P, Ziegler E, Palmer KL: Chlorhexidine induces VanA-type vancomycin resistance genes in enterococci. Antimicrobial agents and chemotherapy 2016, 60:2209-2221;

  • Bonazza C, Andrade SS, Sumikawa JT, Batista FP, Paredes-Gamero EJ, Girão MJ, Oliva MLV, Castro RA: Primary Human Uterine Leiomyoma Cell Culture Quality Control: Some Properties of Myometrial Cells Cultured under Serum Deprivation Conditions in the Presence of Ovarian Steroids. PloS one 2016, 11:e0158578; [Free Article]

  • Burgess BJ, O'Malley JT, Kamakura T, Kristiansen K, Robertson NG, Morton C, Nadol Jr J: Histopathology of the Human Inner Ear in the p. L114P COCH Mutation (DFNA9). Audiology and Neurotology 2016, 21:88-97

  • Dooley K, Devalliere J, Uygun BE, Yarmush ML: Functionalized biopolymer particles enhance performance of a tissue-protective peptide under proteolytic and thermal stress. Biomacromolecules 2016

  • Duan Y, Ma G, Huang X, D'Amore PA, Zhang F, Lei H: The CRISPR/Cas9-created MDM2 T309G enhances vitreous-induced expression of MDM2 and proliferation and survival of cells. Journal of Biological Chemistry 2016:jbc. M116. 729467

  • Elbaz J, Yin P, Voigt CA: Genetic encoding of DNA nanostructures and their self-assembly in living bacteria. Nature communications 2016, 7

  • Joung KJ, Tsai S: Using RNA-guided FokI Nucleases (RFNs) to Increase Specificity for RNA-Guided Genome Editing. US Patent 20,160,153,003; 2016.

  • Lubitz CC, Parangi S, Holm TM, Bernasconi MJ, Schalck AP, Suh H, Economopoulos KP, Gunda V, Donovan SE, Sadow PM, Wirth LJ, Sullivan RJ, Panka DJ: Detection of Circulating BRAF(V600E) in Patients with Papillary Thyroid Carcinoma. J Mol Diagn 2016, 18:100-108.

  • Men C: Sequence-Specific Suppression of Alleles Causing Dominantly Inherited Retinal Degeneration Using the RNA-Guided Nuclease Cas9. 2016.

  • Pianta A, Arvikar S, Strle K, Drouin EE, Wang Q, Costello CE, Steere AC: Evidence for Immune Relevance of Prevotella copri, a Gut Microbe, in Patients with Rheumatoid Arthritis. Arthritis & Rheumatology 2016

  • Reynolds RG, Collar DC, Pasachnik SA, Niemiller ML, Puente-Rolón AR, Revell LJ: Ecological specialization and morphological diversification in greater antillean boas. Evolution 2016

  • Reynolds RG, Puente-Rolón AR, Geneva AJ, Aviles-Rodriguez KJ, Herrmann NC: Discovery of a Remarkable New Boa from the Conception Island Bank, Bahamas. Breviora 2016, 549:1-19

  • Saha SK, Gordan JD, Kleinstiver BP, Vu P, Najem MS, Yeo J-C, Shi L, Kato Y, Levin RS, Webber JT: Isocitrate dehydrogenase mutations confer dasatinib hypersensitivity and SRC-dependence in intrahepatic cholangiocarcinoma. Cancer Discovery 2016:CD-15-1442

  • Scola SE, Cornely K: Mutation of Surface Histidines inHaemophilus influenzaeCarbonic Anhydrase to Enable Purification by Metal Affinity Chromatography. 2016

  • Shin JW, Kim K-H, Chao MJ, Atwal RS, Gillis T, MacDonald ME, Gusella JF, Lee J-M: Permanent inactivation of Huntington's disease mutation by personalized allele-specific CRISPR/Cas9. Human Molecular Genetics 2016:ddw286

  • Siliceo-Cantero HH, Garcia A, Reynolds RG, Pacheco G, Lister BC: Dimorphism and Divergence in Island and Mainland Anoles. Biological Journal of the Linnean Society 2016

  • Sonnevend Á, Ghazawi A, Alqahtani M, Shibl A, Jamal W, Hashmey R, Pal T: Plasmid-mediated colistin resistance in Escherichia coli from the Arabian Peninsula. International Journal of Infectious Diseases 2016

  • W Gillespie J, Wei L, A Petrenko V: Selection of Lung Cancer-Specific Landscape Phage for Targeted Drug Delivery. Combinatorial chemistry & high throughput screening 2016, 19:412-422

  • Wein MN, Liang Y, Goransson O, Sundberg TB, Wang J, Williams EA, O'meara MJ, Govea N, Beqo B, Nishimori S: SIKs control osteocyte responses to parathyroid hormone. Nature Communications 2016, 7:13176; [Free Article]

  • Winchell KM, Reynolds RG, Prado-Irwin SR, Puente-Rolón AR, Revell LJ: Phenotypic shifts in urban areas in the tropical lizard Anolis cristatellus. Evolution 2016

2015

  • Adams HM, Li X, Mascio C, Chesnel L, Palmer KL: Mutations Associated with Reduced Surotomycin Susceptibility in Clostridium difficile and Enterococcus Species. Antimicrobial Agents and Chemotherapy 2015, 59:4139-4147. [Free Article]

  • Bushar LM, Reynolds RG, Tucker S, Pace LC, Lutterschmidt WI, Odum RA, Reinert HK: Genetic Characterization of an Invasive Boa constrictor Population on the Caribbean Island of Aruba. Journal of Herpetology 2015, 49:602-610.

  • Chen L, Tian Y, Chen S, Liesenfeld O: Performance of the cobas ® influenza A/B assay for rapid PCR-based detection of influenza compared to Prodesse ProFlu+ and viral culture. European Journal of Microbiology and Immunology 2015, 5:236-245. [Free Article]

  • Chokshi RH, Larsen AT, Bhayana B, Cotten JF: Breathing Stimulant Compounds Inhibit TASK-3 Potassium Channel Function Likely by Binding at a Common Site in the Channel Pore. Mol Pharmacol 2015, 88:926-934.

  • Dey-Guha I, Alves CP, Yeh AC, Salony, Sole X, Darp R, Ramaswamy S: A Mechanism for Asymmetric Cell Division Resulting in Proliferative Asynchronicity. Molecular Cancer Research 2015, 13:223-230. [Free Article]

  • Dib B, Lin H, Maidana DE, Tian B, Miller JB, Bouzika P, Miller JW, Vavvas DG: Mitochondrial DNA has a pro-inflammatory role in AMD. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 2015, 1853:2897-2906.

  • Gautam V, D'Avanzo C, Berezovska O, Tanzi RE, Kovacs DM: Synaptotagmins interact with APP and promote Abeta generation. Mol Neurodegener 2015, 10:31. [Free Article]

  • Griffin MJ, Reichley SR, Greenway TE, Quiniou SM, Ware C, Gao DX, Gaunt PS, Yanong RP, Pouder DB, Hawke JP, Soto E: Comparison of Edwardsiella ictaluri isolates from different hosts and geographic origins. J Fish Dis 2015.

  • Gultekin Y, Eren E, Ozoren N: Overexpressed NLRC3 acts as an anti-inflammatory cytosolic protein. J Innate Immun 2015, 7:25-36.

  • Hawver LA, Tehrani M, Antczak NM, Kania D, Muser S, Sefcikova J, Beuning PJ: Point mutations in Escherichia coli DNA pol V that confer resistance to non-cognate DNA damage also alter protein-protein interactions. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 2015, 780:1-14.

  • Huang J, Jiao J, Xu W, Zhao H, Zhang C, Shi Y, Xiao Z: miR-155 is upregulated in patients with active tuberculosis and inhibits apoptosis of monocytes by targeting FOXO3. Mol Med Rep 2015, 12:7102-7108.

  • Huo W, Adams HM, Zhang MQ, Palmer KL: Genome Modification in Enterococcus faecalis OG1RF Assessed by Bisulfite Sequencing and Single-Molecule Real-Time Sequencing. J Bacteriol 2015, 197:1939-1951. [Free Article]

  • Kearns PJ, Angell JH, Feinman SG, Bowen JL: Long-term nutrient addition differentially alters community composition and diversity of genes that control nitrous oxide flux from salt marsh sediments. Estuarine, Coastal and Shelf Science 2015, 154:39-47.

  • Lei H, Qian CX, Lei J, Haddock LJ, Mukai S, Kazlauskas A: RasGAP Promotes Autophagy and Thereby Suppresses Platelet-Derived Growth Factor Receptor-Mediated Signaling Events, Cellular Responses, and Pathology. Mol Cell Biol 2015, 35:1673-1685.

  • Lutful Kabir FM, DeInnocentes P, Bird RC: Altered microRNA Expression Profiles and Regulation of INK4A/CDKN2A Tumor Suppressor Genes in Canine Breast Cancer Models. J Cell Biochem 2015, 116:2956-2969.

  • Lyons C, Raustad N, Bustos MA, Shiaris M: Incidence of Type II CRISPR1-Cas Systems in Enterococcus Is Species-Dependent. PLoS One 2015, 10:e0143544. [Free Article]

  • Mauris J, Dieckow J, Schob S, Pulli B, Hatton MP, Jeong S, Bauskar A, Gabison E, Nowak R, Argüeso P: Loss of CD147 results in impaired epithelial cell differentiation and malformation of the meibomian gland. Cell Death Dis 2015, 6:e1726. [Free Article]

  • Molinaro A, Tiosano D, Takatani R, Chrysis D, Russell W, Koscielniak N, Kottler ML, Agretti P, De Marco G, Ahtiainen P, Christov M, Makitie O, Tonacchera M, Juppner H: TSH elevations as the first laboratory evidence for pseudohypoparathyroidism type Ib (PHP-Ib). J Bone Miner Res 2015, 30:906-912. [Free Article]

  • Niederst MJ, Hu H, Mulvey HE, Lockerman EL, Garcia AR, Piotrowska Z, Sequist LV, Engelman JA: The Allelic Context of the C797S Mutation Acquired upon Treatment with Third-Generation EGFR Inhibitors Impacts Sensitivity to Subsequent Treatment Strategies. Clin Cancer Res 2015, 21:3924-3933. [Free Article]

  • Piotrowska Z, Niederst MJ, Karlovich CA, Wakelee HA, Neal JW, Mino-Kenudson M, Fulton L, Hata AN, Lockerman EL, Kalsy A, Digumarthy S, Muzikansky A, Raponi M, Garcia AR, Mulvey HE, Parks MK, DiCecca RH, Dias-Santagata D, Iafrate AJ, Shaw AT, Allen AR, Engelman JA, Sequist LV: Heterogeneity Underlies the Emergence of EGFRT790 Wild-Type Clones Following Treatment of T790M-Positive Cancers with a Third-Generation EGFR Inhibitor. Cancer Discov 2015, 5:713-722. [Free Article]

  • Reynolds RG, Puente-Rolón AR, Platenberg R, Tyler RK, Tolson PJ, Revell LJ: Large divergence and low diversity suggest genetically informed conservation strategies for the endangered Virgin Islands Boa (Chilabothrus monensis). Global Ecology and Conservation 2015, 3:487-502.

  • Samoylov A, Cochran A, Schemera B, Kutzler M, Donovan C, Petrenko V, Bartol F, Samoylova T: Humoral immune responses against gonadotropin releasing hormone elicited by immunization with phage-peptide constructs obtained via phage display. Journal of Biotechnology 2015, 216:20-28.

  • Scavotto RE, Dziallas C, Bentzon-Tilia M, Riemann L, Moisander PH: Nitrogen-fixing bacteria associated with copepods in coastal waters of the North Atlantic Ocean. Environ Microbiol 2015, 17:3754-3765.

  • Shoemaker KM, Moisander PH: Microbial diversity associated with copepods in the North Atlantic subtropical gyre. FEMS Microbiol Ecol 2015, 91.

  • Takatani R, Minagawa M, Molinaro A, Reyes M, Kinoshita K, Takatani T, Kazukawa I, Nagatsuma M, Kashimada K, Sato K, Matsushita K, Nomura F, Shimojo N, Juppner H: Similar frequency of paternal uniparental disomy involving chromosome 20q (patUPD20q) in Japanese and Caucasian patients affected by sporadic pseudohypoparathyroidism type Ib (sporPHP1B). Bone 2015, 79:15-20.

  • Takatani R, Molinaro A, Grigelioniene G, Tafaj O, Watanabe T, Reyes M, Sharma A, Singhal V, Raymond FL, Linglart A, Juppner H: Analysis of Multiple Families with Single Individuals Affected by Pseudohypoparathyroidism Type Ib (PHP1B) Reveals Only One Novel Maternally Inherited GNAS Deletion. J Bone Miner Res 2015.

  • Zhang Z, Fang Y, Wang Q, Sun Y, Xiong C, Cao L, Wang B, Bao N, Zhao J: Tumor necrosis factor-like weak inducer of apoptosis regulates particle-induced inflammatory osteolysis via the p38 mitogen-activated protein kinase signaling pathway. Mol Med Rep 2015, 12:1499-1505.

2014

  • Baker JM, Boyce FM: High-throughput Functional Screening using a Homemade Dual-glow Luciferase Assay. Journal of Visualized Experiments 2014.

  • Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Rocap G, Moore LR, Chisholm SW: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Sci Data 2014, 1:140034. [Free Article]

  • Dostalova Z, Zhou X, Liu A, Zhang X, Zhang Y, Desai R, Forman SA, Miller KW: Human alpha1beta3gamma2L gamma-aminobutyric acid type A receptors: High-level production and purification in a functional state. Protein Sci 2014, 23:157-166. [Free Article]

  • Ferdman J, Porcheray F, Gao B, Moore C, DeVito J, Dougherty S, Thomas MV, Farkash EA, Elias N, Kawai T, Malek SK, Tullius SG, Wong W, Zorn E: Expansion and somatic hypermutation of B-cell clones in rejected human kidney grafts. Transplantation 2014, 98:766-772. [Free Article]

  • Gautam V, D'Avanzo C, Hebisch M, Kovacs DM, Kim DY: BACE1 activity regulates cell surface contactin-2 levels. Mol Neurodegener 2014, 9:4. [Free Article]

  • Ghetas A, Thaxton G, Breedlove C, van Santen V, Toro H: Effects of Adaptation of Infectious Bronchitis Virus Arkansas Attenuated Vaccine to Embryonic Kidney Cells. Avian diseases 2014, 59:106-113

  • Lin MV, Charlton AN, Rouster SD, Zamor PJ, Sherman KE: Hepatitis C virus NS3 mutations in haemophiliacs. Haemophilia 2014, 20:659-665. [Free Article]

  • Reynolds RG, Puente-Rolón AR, Kolodzaike K, Butler-Smith T: Isolation and characterization of 23 novel polymorphic microsatellite markers from the endangered Puerto Rican boa (Chilabothrus inornatus) using paired-end Illumina shotgun sequencing. Conservation Genetics Resources 2014, 6:107-109.

  • Villet RA, Truong-Bolduc QC, Wang Y, Estabrooks Z, Medeiros H, Hooper DC: Regulation of expression of abcA and its response to environmental conditions. J Bacteriol 2014, 196:1532-1539. [Free Article]

  • Yuksel S, Eren E, Hatemi G, Sahillio lu AC, Gultekin Y, Demiroz D, Akdis C, Fresko I, Ozoren N: Novel NLRP3/cryopyrin mutations and pro-inflammatory cytokine profiles in Behcet's syndrome patients. International Immunology 2014, 26:71-81.

2013

  • Arystarkhova E, Liu YB, Salazar C, Stanojevic V, Clifford RJ, Kaplan JH, Kidder GM, Sweadner KJ: Hyperplasia of Pancreatic Beta Cells and Improved Glucose Tolerance in Mice Deficient in the FXYD2 Subunit of Na,K-ATPase. Journal of Biological Chemistry 2013, 288:7077-7085. [Free Article]

  • Clarke MSF, Sundaresan A, Vanderburg CR, Banigan MG, Pellis NR: A three-dimensional tissue culture model of bone formation utilizing rotational co-culture of human adult osteoblasts and osteoclasts. Acta Biomaterialia 2013, 9:7908-7916.

  • Dai N, Christiansen J, Nielsen FC, Avruch J: mTOR complex 2 phosphorylates IMP1 cotranslationally to promote IGF2 production and the proliferation of mouse embryonic fibroblasts. Genes & Development 2013, 27:301-312. [Free Article]

  • Fu Y, Foden JA, Khayter C, Maeder ML, Reyon D, Joung JK, Sander JD: High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 2013, 31:822-826. [Free Article]

  • Gunda V, Cogdill AP, Bernasconi MJ, Wargo JA, Parangi S: Potential role of 5-Aza-2'-deoxycytidine induced MAGE-A4 expression in immunotherapy for anaplastic thyroid cancer. Surgery 2013, 154:1456-1462. [Free Article]

  • Hwang WY, Fu Y, Reyon D, Maeder ML, Kaini P, Sander JD, Joung JK, Peterson RT, Yeh JR: Heritable and precise zebrafish genome editing using a CRISPR-Cas system. PLoS One 2013, 8:e68708. [Free Article]

  • Jacobo SMP, DeAngelis MM, Kim IK, Kazlauskas A: Age-Related Macular Degeneration-Associated Silent Polymorphisms in HtrA1 Impair Its Ability To Antagonize Insulin-Like Growth Factor 1. Molecular and Cellular Biology 2013, 33:1976-1990. [Free Article]

  • Kwak H-H, Park K-M, Nam H-S, Park S-M, Woo H-M: Disparate Hypervariable Region-1 of Mitochondrial DNA Did Not Induce Skin Allograft Rejection in Cloned Porcine Models. Transplantation Proceedings 2013, 45:1787-1791.

  • Kwak YG, Truong-Bolduc QC, Kim HB, Song K-H, Kim ES, Hooper DC: Association of norB overexpression and fluoroquinolone resistance in clinical isolates of Staphylococcus aureus from Korea. Journal of Antimicrobial Chemotherapy 2013:dkt286. [Free Article]

  • Maeder ML, Angstman JF, Richardson ME, Linder SJ, Cascio VM, Tsai SQ, Ho QH, Sander JD, Reyon D, Bernstein BE, Costello JF, Wilkinson MF, Joung JK: Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins. Nat Biotechnol 2013, 31:1137-1142. [Free Article]

  • Mauris J, Mantelli F, Woodward AM, Cao Z, Bertozzi CR, Panjwani N, Godula K, Argüeso P: Modulation of ocular surface glycocalyx barrier function by a galectin-3 N-terminal deletion mutant and membrane-anchored synthetic glycopolymers. PloS one 2013, 8:e72304. [Free Article]

  • Palomares RA, Marley SM, Givens MD, Gallardo RA, Brock KV: Bovine viral diarrhea virus fetal persistent infection after immunization with a contaminated modified-live virus vaccine. Theriogenology 2013, 79:1184-1195.

  • Puente-Rolón AR, Reynolds RG, Revell LJ: Preliminary Genetic Analysis Supports Cave Populations as Targets for Conservation in the Endemic Endangered Puerto Rican Boa (Boidae: Epicrates inornatus ). PLOS ONE 2013, 8:e63899. [Free Article]

  • Reynolds RG, Niemiller ML, Hedges SB, Dornburg A, Puente-Rolón AR, Revell LJ: Molecular phylogeny and historical biogeography of West Indian boid snakes (Chilabothrus). Molecular Phylogenetics and Evolution 2013, 68:461-470.

  • Reynolds RG, Puente-Rolón AR, Reed RN, Revell LJ: Genetic analysis of a novel invasion of Puerto Rico by an exotic constricting snake. Biological Invasions 2013, 15:953-959.

  • Saur T, DeMarco SE, Ortiz A, Sliwoski GR, Hao L, Wang X, Cohen BM, Buttner EA: A genome-wide RNAi screen in Caenorhabditis elegans identifies the nicotinic acetylcholine receptor subunit ACR-7 as an antipsychotic drug target. PLoS Genet 2013, 9:e1003313. [Free Article]

  • Zhang X, Rice K, Wang Y, Chen W, Zhong Y, Nakayama Y, Zhou Y, Klibanski A: Maternally Expressed Gene 3 (MEG3) Noncoding Ribonucleic Acid: Isoform Structure, Expression, and Functions. Endocrinology 2013.

2012

  • Aly SA, Debavalya N, Suh S-J, Oryazabal OA, Boothe DM: Molecular mechanisms of antimicrobial resistance in fecal Escherichia coli of healthy dogs after enrofloxacin or amoxicillin administration. Canadian Journal of Microbiology 2012, 58:1288-1294.

  • Fagbohun OA, Bedi D, Grabchenko NI, Deinnocentes PA, Bird RC, Petrenko VA: Landscape phages and their fusion proteins targeted to breast cancer cells. Protein Engineering Design and Selection 2012, 25:271-283. [Free Article]

  • Gallardo RA, van Santen VL, Toro H: Effects of chicken anaemia virus and infectious bursal disease virus-induced immunodeficiency on infectious bronchitis virus replication and genotypic drift. Avian Pathology 2012, 41:451-458.

  • Kos VN, Desjardins CA, Griggs A, Cerqueira G, Van Tonder A, Holden MTG, Godfrey P, Palmer KL, Bodi K, Mongodin EF, Wortman J, Feldgarden M, Lawley T, Gill SR, Haas BJ, Birren B, Gilmore MS: Comparative Genomics of Vancomycin-Resistant Staphylococcus aureus Strains and Their Positions within the Clade Most Commonly Associated with Methicillin-Resistant S. aureus Hospital-Acquired Infection in the United States. mBio 2012, 3:e00112-00112-e00112-00112. [Free Article]

  • Maison SF, Liu XP, Eatock RA, Sibley DR, Grandy DK, Liberman MC: Dopaminergic signaling in the cochlea: receptor expression patterns and deletion phenotypes. J Neurosci 2012, 32:344-355. [Free Article]

  • Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, Khayter C, Ramirez CL, Joung JK, Langenau DM: Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs). PLoS One 2012, 7:e37877.

  • Muhammed M, Fuchs BB, Wu MP, Breger J, Coleman JJ, Mylonakis E: The role of mycelium production and a MAPK-mediated immune response in the C. elegans-Fusarium model system. Medical Mycology 2012, 50:488-496. [Free Article]

  • Ndegwa EN, Joiner KS, Toro H, Van Ginkel FW, Van Santen VL: The proportion of specific viral subpopulations in attenuated Arkansas Delmarva Poultry Industry infectious bronchitis vaccines influences vaccination outcome. Avian diseases 2012, 56:642-653

  • Porcheray F, DeVito J, Helou Y, Dargon I, Fraser JW, Nobecourt P, Ferdman J, Germana S, Girouard TC, Kawai T, Saidman SL, Wong W, Colvin RB, Leguern C, Zorn E Expansion of Polyreactive B Cells Cross-Reactive to HLA and Self in the Blood of a Patient With Kidney Graft Rejection: Polyreactive Antibodies in Humoral Rejection. American Journal of Transplantation 2012, 12:2088-2097.

  • Ramirez CL, Certo MT, Mussolino C, Goodwin MJ, Cradick TJ, McCaffrey AP, Cathomen T, Scharenberg AM, Joung JK: Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects. Nucleic Acids Research 2012, 40:5560-5568. [Free Article]

  • Ruan GX, Kazlauskas A: Axl is essential for VEGF-A-dependent activation of PI3K/Akt. EMBO J 2012, 31:1692-1703. [Free Article]

  • Tamang DL, Pirzai W, Priebe GP, Traficante DC, Pier GB, Falck JR, Morisseau C, Hammock BD, McCormick BA, Gronert K, Hurley BP: Hepoxilin A3 Facilitates Neutrophilic Breach of Lipoxygenase-Expressing Airway Epithelial Barriers. The Journal of Immunology 2012, 189:4960-4969. [Free Article]

  • Toro H, Pennington D, Gallardo RA, van Santen VL, van Ginkel FW, Zhang J, Joiner KS: Infectious Bronchitis Virus Subpopulations in Vaccinated Chickens After Challenge. Avian Diseases 2012, 56:501-508.

  • Yu Y, Sanderson SR, Reyes M, Sharma A, Dunbar N, Srivastava T, Jüppner H, Bergwitz C: Novel NaPi-IIc mutations causing HHRH and idiopathic hypercalciuria in several unrelated families: Long-term follow-up in one kindred. Bone 2012, 50:1100-1106. [Free Article]

2011

  • Alter G, Heckerman D, Schneidewind A, Fadda L, Kadie CM, Carlson JM, Oniangue-Ndza C, Martin M, Li B, Khakoo SI, Carrington M, Allen TM, Altfeld M: HIV-1 adaptation to NK-cell-mediated immune pressure. Nature 2011, 476:96-100. [Free Article]

  • Coleman JJ, Muhammed M, Kasperkovitz PV, Vyas JM, Mylonakis E: Fusarium pathogenesis investigated using Galleria mellonella as a heterologous host. Fungal Biology 2011, 115:1279-1289. [Free Article]

  • Faber AC, Corcoran RB, Ebi H, Sequist LV, Waltman BA, Chung E, Incio J, Digumarthy SR, Pollack SF, Song Y, Muzikansky A, Lifshits E, Roberge S, Coffman EJ, Benes CH, Gomez HL, Baselga J, Arteaga CL, Rivera MN, Dias-Santagata D, Jain RK, Engelman JA: BIM expression in treatment-naive cancers predicts responsiveness to kinase inhibitors. Cancer Discov 2011, 1:352-365. [Free Article]

  • Hawver LA, Gillooly CA, Beuning PJ: Characterization of Escherichia coli UmuC Active-Site Loops Identifies Variants That Confer UV Hypersensitivity. Journal of Bacteriology 2011, 193:5400-5411. [Free Article]

  • Jeong H, Cohen DE, Cui L, Supinski A, Savas JN, Mazzulli JR, Yates JR, Bordone L, Guarente L, Krainc D: Sirt1 mediates neuroprotection from mutant huntingtin by activation of the TORC1 and CREB transcriptional pathway. Nature Medicine 2011, 18:159-165. [Free Article]

  • Lei H, Velez G, Kazlauskas A: Pathological signaling via platelet-derived growth factor receptor Α involves chronic activation of Akt and suppression of p53. Molecular and cellular biology 2011, 31:1788-1799. [Free Article]

  • Liu Z, Segawa H, Aydin C, Reyes M, Erben RG, Weinstein LS, Chen M, Marshansky V, Fröhlich LF, Bastepe M: Transgenic Overexpression of the Extra-Large GsΑ Variant XLΑs Enhances GsΑ-Mediated Responses in the Mouse Renal Proximal Tubule in Vivo. Endocrinology 2011, 152:1222-1233.

  • Palmer KL, Daniel A, Hardy C, Silverman J, Gilmore MS: Genetic Basis for Daptomycin Resistance in Enterococci. Antimicrobial Agents and Chemotherapy 2011, 55:3345-3356. [Free Article]

  • Phulwani P, Bergwitz C, Jaureguiberry G, Rasoulpour M, Estrada E: Hereditary hypophosphatemic rickets with hypercalciuria and nephrolithiasis-Identification of a novel SLC34A3/NaPi-IIc mutation. American Journal of Medical Genetics Part A 2011, 155:626-633.

  • Raytcheva DA, Haase-Pettingell C, Piret JM, King JA: Intracellular Assembly of Cyanophage Syn5 Proceeds through a Scaffold-Containing Procapsid. Journal of Virology 2011, 85:2406-2415. [Free Article]

  • Somarowthu S, Brodkin HR, D'Aquino JA, Ringe D, Ondrechen MJ, Beuning PJ: A Tale of Two Isomerases: Compact versus Extended Active Sites in Ketosteroid Isomerase and Phosphoglucose Isomerase. Biochemistry 2011, 50:9283-9295.

  • Spencer RJ, del Rosario BC, Pinter SF, Lessing D, Sadreyev RI, Lee JT: A Boundary Element Between Tsix and Xist Binds the Chromatin Insulator Ctcf and Contributes to Initiation of X-Chromosome Inactivation. Genetics 2011, 189:441-454. [Free Article]

  • Sweadner KJ, Pascoa JL, Salazar CA, Arystarkhova E: Post-transcriptional Control of Na,K-ATPase Activity and Cell Growth by a Splice Variant of FXYD2 Protein with Modified mRNA. Journal of Biological Chemistry 2011, 286:18290-18300. [Free Article]

  • Vallabhajosyula P, Tena A, Yamada K, Sachs DH: Signal Joint T-Cell Receptor Excision Circle Assay in Miniature Swine. Transplantation 2011, 92:634-640. [Free Article]

2010

  • Chillambhi S, Turan S, Hwang D-Y, Chen H-C, Jüppner H, Bastepe M: Deletion of the Noncoding GNAS Antisense Transcript Causes Pseudohypoparathyroidism Type Ib and Biparental Defects of GNAS Methylation in cis. The Journal of Clinical Endocrinology & Metabolism 2010, 95:3993-4002.

  • Dostalova Z, Liu A, Zhou X, Farmer SL, Krenzel ES, Arevalo E, Desai R, Feinberg-Zadek PL, Davies PA, Yamodo IH, Forman SA, Miller KW: High-level expression and purification of Cys-loop ligand-gated ion channels in a tetracycline-inducible stable mammalian cell line: GABA A and serotonin receptors: Over-Expression of Neuronal Cys-Loop Receptors. Protein Science 2010, 19:1728-1738. [Free Article]

  • Fritz S, Fernández-del Castillo C, Iafrate AJ, Mino-Kenudson M, Neyhard N, LaFemina J, Stirman A, Warshaw AL, Thayer SP: Novel Xenograft and Cell Line Derived From an Invasive Intraductal Papillary Mucinous Neoplasm of the Pancreas Give New Insights Into Molecular Mechanisms:. Pancreas 2010, 39:308-314. [Free Article]

  • Gallardo RA, Van Santen VL, Toro H: Host intraspatial selection of infectious bronchitis virus populations. Avian diseases 2010, 54:807-813

  • Hurley BP, Goodman AL, Mumy KL, Murphy P, Lory S, McCormick BA: The two-component sensor response regulator RoxS/RoxR plays a role in Pseudomonas aeruginosa interactions with airway epithelial cells. Microbes and Infection 2010, 12:190-198. [Free Article]

  • Malo MS, Alam SN, Mostafa G, Zeller SJ, Johnson PV, Mohammad N, Chen KT, Moss AK, Ramasamy S, Faruqui A, Hodin S, Malo PS, Ebrahimi F, Biswas B, Narisawa S, Millan JL, Warren HS, Kaplan JB, Kitts CL, Hohmann EL, Hodin RA: Intestinal alkaline phosphatase preserves the normal homeostasis of gut microbiota. Gut 2010, 59:1476-1484.

  • Palmer KL, Gilmore MS: Multidrug-Resistant Enterococci Lack CRISPR-cas. mBio 2010, 1:e00227-00210-e00227-00219. [Free Article]

  • Shen H-Y, Zhao Y, Chen X-Y, Xiong R-P, Lu J-L, Chen J-F, Chen L-Y, Zhou Y-G: Differential Alteration of Heat Shock Protein 90 in Mice Modifies Glucocorticoid Receptor Function and Susceptibility to Trauma. Journal of Neurotrauma 2010, 27:373-381.

  • Szostak JW: DNA ends: just the beginning (Nobel lecture). Angewandte Chemie International Edition 2010, 49:7386-7404

  • Zhang S, Wang F, Keats J, Ning Y, Wardwell SD, Moran L, Mohemmad QK, Ye E, Anjum R, Wang Y: AP26113, a potent ALK inhibitor, overcomes mutations in EML4-ALK that confer resistance to PF-02341066. In Proceedings of the 101st Annual Meeting of the American Association for Cancer Research. 2010: 17-21.

  • Zhou Y, Cheunsuchon P, Nakayama Y, Lawlor MW, Zhong Y, Rice KA, Zhang L, Zhang X, Gordon FE, Lidov HGW, Bronson RT, Klibanski A: Activation of paternally expressed genes and perinatal death caused by deletion of the Gtl2 gene. Development 2010, 137:2643-2652. [Free Article]

2009

  • Aydin C, Aytan N, Mahon MJ, Tawfeek HA, Kowall NW, Dedeoglu A, Bastepe M: Extralarge XLΑs (XXLΑs), a variant of stimulatory G protein Α-subunit (GsΑ), is a distinct, membrane-anchored GNAS product that can mimic GsΑ. Endocrinology 2009, 150:3567-3575.

  • Brown LCW, Acker MG, Clardy J, Walsh CT, Fischbach MA: Thirteen posttranslational modifications convert a 14-residue peptide into the antibiotic thiocillin. Proceedings of the National Academy of Sciences 2009, 106:2549-2553.

  • Chan Y-M, Guillebon Ad, Lang-Muritano M, Plummer L, Cerrato F, Tsiaras S, Gaspert A, Lavoie HB, Wu C-H, Crowley WF, Amory JK, Pitteloud N, Seminara SB: GNRH1 mutations in patients with idiopathic hypogonadotropic hypogonadism. Proceedings of the National Academy of Sciences 2009, 106:11703-11708. [Free Article]

  • Hanekamp JS, Okumi M, Tena A, Arn S, Yamada K, Sachs DH: Cytoplasmic Inheritance of Transplantation Antigens in Animals Produced by Nuclear Transfer:. Transplantation 2009, 88:30-37. [Free Article]

  • Jones KL, McHugh GA, Glickstein LJ, Steere AC: Analysis of Borrelia burgdorferi genotypes in patients with lyme arthritis: High frequency of ribosomal RNA intergenic spacer type 1 strains in antibiotic-refractory arthritis. Arthritis & Rheumatism 2009, 60:2174-2182.

  • Kim YB: Improved trimethoprim-resistance cassette for prokaryotic selections. Journal of Bioscience and Bioengineering 2009, 108:441-445.

  • Hanekamp JS, Okumi M, Tena A, Arn S, Yamada K, Sachs DH: Cytoplasmic Inheritance of Transplantation Antigens in Animals Produced by Nuclear Transfer:. Transplantation 2009, 88:30-37. [Free Article]

  • Mahon MJ: The Parathyroid Hormone 1 Receptor Directly Binds to the FERM Domain of Ezrin, an Interaction that Supports Apical Receptor Localization and Signaling in LLC-PK1 Cells. Molecular Endocrinology 2009, 23:1691-1701.

  • Medoff BD, Landry AL, Wittbold KA, Sandall BP, Derby MC, Cao Z, Adams JC, Xavier RJ: CARMA3 Mediates Lysophosphatidic Acid-Stimulated Cytokine Secretion by Bronchial Epithelial Cells. American Journal of Respiratory Cell and Molecular Biology 2009, 40:286-294.

  • Quigley BR, Tropp BE: E. coli cardiolipin synthase: Function of N-terminal conserved residues. Biochimica et Biophysica Acta (BBA) - Biomembranes 2009, 1788:2107-2113.

  • Wang YE, Li B, Carlson JM, Streeck H, Gladden AD, Goodman R, Schneidewind A, Power KA, Toth I, Frahm N, Alter G, Brander C, Carrington M, Walker BD, Altfeld M, Heckerman D, Allen TM: Protective HLA Class I Alleles That Restrict Acute-Phase CD8+ T-Cell Responses Are Associated with Viral Escape Mutations Located in Highly Conserved Regions of Human Immunodeficiency Virus Type 1. Journal of Virology 2009, 83:1845-1855. [Free Article]